Trying to follow tutorial and implement Digital Normalization. 

http://ged.msu.edu/angus/metag-assembly-2011/diginorm.html



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First went to beginning of tutorial 



http://ged.msu.edu/angus/metag-assembly-2011/index.html


 Want to run locally so skipped "Starting your cloud system"





 mounted a new folder I named "khmer"



robertsmac:khmer sr320$ curl -O http://python-distribute.org/distribute_setup.py
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 15757  100 15757    0     0  23556      0 --:--:-- --:--:-- --:--:-- 31326
robertsmac:khmer sr320$ python distribute_setup.py
Downloading http://pypi.python.org/packages/source/d/distribute/distribute-0.6.24.tar.gz
Extracting in /var/folders/sy/s4s23msj2hg86pcvg8n312fw0000gn/T/tmpeBEs_O
Now working in /var/folders/sy/s4s23msj2hg86pcvg8n312fw0000gn/T/tmpeBEs_O/distribute-0.6.24
Installing Distribute
Before install bootstrap.
Scanning installed packages
Setuptools installation detected at /System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python
Non-egg installation
Removing elements out of the way...
Renaming /System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/setuptools-0.6c12dev_r85381-py2.7.egg-info into /System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/setuptools-0.6c12dev_r85381-py2.7.egg-info.OLD.1327508690.85
Traceback (most recent call last):
  File "setup.py", line 127, in <module>
    _before_install()
  File "/private/var/folders/sy/s4s23msj2hg86pcvg8n312fw0000gn/T/tmpeBEs_O/distribute-0.6.24/distribute_setup.py", line 348, in _before_install
    _fake_setuptools()
  File "/private/var/folders/sy/s4s23msj2hg86pcvg8n312fw0000gn/T/tmpeBEs_O/distribute-0.6.24/distribute_setup.py", line 402, in _fake_setuptools
    res = _remove_flat_installation(setuptools_location)
  File "/private/var/folders/sy/s4s23msj2hg86pcvg8n312fw0000gn/T/tmpeBEs_O/distribute-0.6.24/distribute_setup.py", line 222, in __no_sandbox
    return function(*args, **kw)
  File "/private/var/folders/sy/s4s23msj2hg86pcvg8n312fw0000gn/T/tmpeBEs_O/distribute-0.6.24/distribute_setup.py", line 273, in _remove_flat_installation
    patched = _patch_egg_dir(pkg_info)
  File "/private/var/folders/sy/s4s23msj2hg86pcvg8n312fw0000gn/T/tmpeBEs_O/distribute-0.6.24/distribute_setup.py", line 222, in __no_sandbox
    return function(*args, **kw)
  File "/private/var/folders/sy/s4s23msj2hg86pcvg8n312fw0000gn/T/tmpeBEs_O/distribute-0.6.24/distribute_setup.py", line 333, in _patch_egg_dir
    _rename_path(path)
  File "/private/var/folders/sy/s4s23msj2hg86pcvg8n312fw0000gn/T/tmpeBEs_O/distribute-0.6.24/distribute_setup.py", line 254, in _rename_path
    os.rename(path, new_name)
OSError: [Errno 13] Permission denied
Something went wrong during the installation.
See the error message above.
robertsmac:khmer sr320$ 





FIXED

install everything ….. output below
Terminal Saved Output


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